Modulators of virus assembly as antiviral agents

ABSTRACT

In addition to containing and protecting the viral genome, the capsid (protein shell) of hepatitis B virus (HBV) plays critical roles in the viral life cycle including regulation of intracellular trafficking and nucleic acid metabolism. Substituted pyrimidine modulators of the assembly of the HBV capsid structure and methods for their use are described.

CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims priority under 35 USC §119(e) to U.S.Provisional Application Ser. No. 61/514,179, filed on Aug. 2, 2011, theentire disclosure of which is incorporated herein by reference.

TECHNICAL FIELD

This application pertains to substituted dihydropyrimidines and theiruse as antivirals.

BACKGROUND AND SUMMARY OF THE INVENTION

The hepatitis B virus (HBV), which belongs to the hepadnavirus family,is a causative agent of acute and chronic hepatitis. HBV infections arethe world's ninth leading cause of death. HBV infection often leads toacute hepatitis and liver damage, and causes abdominal pain, jaundice,and elevated blood levels of certain enzymes. HBV can cause fulminanthepatitis, a rapidly progressive form of the disease in which massivesections of the liver are destroyed. Many patients recover from acuteviral hepatitis, but in certain other patients, especially youngchildren, viral infection persists for an extended, or indefinite,period, causing a chronic infection. Chronic infections can lead tochronic persistent hepatitis. Chronic persistent hepatitis can causefatigue, liver damage, cirrhosis of the liver, and hepatocellularcarcinoma, a primary liver cancer.

HBV infection is a serious problem among the homo- and heterosexualpopulation, intravenous drug users, organ transplant recipients, andblood transfusion patients. New infection with HBV can be prevented byvaccination. However, the present vaccination is not effective for theapproximately 350 million chronic carriers worldwide. It has beenobserved that suppression or eradication of the replication of HBV inthe liver leads to improved liver pathology and decreased progression toliver cirrhosis and hepatocellular carcinoma.

One of the current therapies approved in the United States for treatingchronic hepatitis B infection is alpha interferon, which is far fromideal. According to the American Liver Foundation and the InternationalHepatitis Foundation, patients with conditions such as advancedhepatitis, HIV co-infection, drug abuse or others are not eligible forthis treatment, resulting in less than 50% of chronic carriers obtainingthis therapy. Of these patients, only about 40% respond to thetreatment. Many of these patients also relapse after treatment isstopped, and only about 30% of the patients show a long term benefit.Viral disappearance is only seen in about 10-20% of the treatedpatients. These data suggest that there is an extremely low responserate in patients treated with alpha interferon. In addition to the lowresponse rate, interferon therapy causes severe side effects such asinsomnia, depression, nausea, vomiting, fever and fatigue. Anotherapproved class of drugs for treating HBV infection is reversetranscriptase inhibitors exemplified by lamivudine, entecavir, andtenofovir. Although reverse transcriptase inhibitors have good antiviralactivity, resistance can develop rapidly during treatment, there iscross-reactivity of resistance, and side effects such as kidney damage.There is also cross-reactivity between reverse transcriptase inhibitorsfor HBV and HIV. Furthermore, reverse transcriptase inhibitors are notknown to lead to HBV clearance and, worse, discontinuation of thetherapy is known to lead to a rebound effect occurs in most cases thatcan be life threatening.

Targeting assembly of the HBV capsid protein (CP), which has no humanhomolog, may be a powerful, general approach for developing anti-HBVtherapeutics. It has been found that heteroaryldihydropyrimidines (HAPs)can enhance the rate and extent of CP assembly over a broadconcentration range leading to aberrant particles, dominated byhexagonal arrays of CP. HAPs can also stabilize virus cores, preventingnormal dissociation and release of the genome. Without being bound bytheory, it is believed that the compounds described herein can disruptHBV assembly, altering either the timing of formation of the capsid, thestability of the capsid, or the geometry of capsid formation, andinterfering with viral infection. It is appreciated that enhancing therate of CP aggregation and/or the rate of capsid assembly can depletethe concentration of CP, resulting in inhibition of non-structuralactivities mediated by CP.

In one illustrative embodiment of the invention, a compound having theformula

or a pharmaceutically acceptable salt thereof is described, wherein

Ar¹ is selected from the group consisting of phenyl, 2-pyridyl,3-pyridyl, and 4-pyridyl;

R¹ is hydrogen or pro-drug forming group;

Ak is alkylene;

Z is

where X is CHN₃, C═O, C═NR⁵, —C(O)N(R^(N))—, or NR^(N), where R⁵ ishydroxy or a derivative thereof or amino or a derivative thereof, andR^(N) is selected from the group consisting of alkyl, alkenyl, alkynyl,heteroalkyl, arylalkyl, heteroarylalkyl, alkyl-C(O), heteroalkyl-C(O),alkoxyl-C(O), alkynyl-C(O), alkylacylamino-C(O), andheteroalkylacylamino-C(O), each of which is optionally substituted;

R⁴ is alkyl, heteroalkyl, alkenyl, or alkynyl, each of which isoptionally substituted;

Y is O, or HN;

R^(A) represents from 0 to 3 substituents independently in eachinstance, halo or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted; and

R^(B) represents from 0 to 3 substituents independently in eachinstance, halogen or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted.

In another illustrative embodiment, a compound having the formula

or a pharmaceutically acceptable salt thereof is described, wherein;

Ar² is aryl or heteroaryl each of which is optionally substituted;

R¹ is independently in each instance selected from the group consistingof hydrogen and pro-drug forming group;

R⁴ is alkyl, heteroalkyl, alkenyl, or alkynyl, each of which isoptionally substituted;

Y is O, or HN;

R⁶ is in each instance independently selected from the group consistingof hydrogen and Ak-Z¹, where Ak is alkylene, and Z¹ is independently ineach instance hydrogen or NR²R³; where R² and R³ are independently ineach instance hydrogen, or selected from the group consisting of alkyl,cycloalkyl, heteroalkyl and heterocycloalkyl, each of which isoptionally substituted, or

R² and R³ are taken together with the attached nitrogen to form

wherein X is CHN₃, C═O, —C(O)N(R^(Na))—, C═NR⁵, or NR^(Na); where R⁵ ishydroxy or a derivative thereof or amino or a derivative thereof; andR^(Na) is selected from the group consisting of hydrogen, and alkyl,alkenyl, alkynyl, heteroalkyl, arylalkyl, heteroarylalkyl, alkyl-C(O),heteroalkyl-C(O), alkoxyl-C(O), alkynyl-C(O), alkylacylamino-C(O), andheteroalkylacylamino-C(O), each of which is optionally substituted;

Ak¹ is (CH₂)n, where n is 1 to 4;

R^(A) represents from 0 to 3 substituents independently in eachinstance, halo or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted; and

R^(B) represents from 0 to 3 substituents independently in eachinstance, halogen or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted.

In addition, various genera and subgenera of each of R¹, R², R³, R⁴, R⁵,R⁶, Ar¹, Ar², X, Ak, Ak¹, R^(A), R^(B), and Z are described herein. Itis to be understood that all possible combinations of the various generaand subgenera of each of R¹, R², R³, R⁴, R⁵, R⁶, Ar¹, Ar², X, Ak, Ak¹,R^(A), R^(B), and Z described herein represent additional illustrativeembodiments of compounds of the invention described herein. It is to befurther understood that each of those additional illustrativeembodiments of compounds may be used in any of the compositions,methods, and/or uses described herein.

In another embodiment, pharmaceutical compositions containing one ormore of the compounds are also described herein. In one aspect, thecompositions include a therapeutically effective amount of the one ormore compounds for treating a patient with hepatitis B. It is to beunderstood that the compositions may include other component and/oringredients, including, but not limited to, other therapeutically activecompounds, and/or one or more carriers, diluents, excipients, and thelike. In another embodiment, methods for using the compounds andpharmaceutical compositions for treating patients with hepatitis B arealso described herein. In one aspect, the methods include the step ofadministering one or more of the compounds and/or compositions describedherein to a patient with hepatitis B. In another aspect, the methodsinclude administering a therapeutically effective amount of the one ormore compounds and/or compositions described herein for treatingpatients with hepatitis B. In another embodiment, uses of the compoundsand compositions in the manufacture of a medicament for treatingpatients with hepatitis B are also described herein. In one aspect, themedicaments include a therapeutically effective amount of the one ormore compounds and/or compositions for treating a patient with hepatitisB.

It is appreciated herein that the compounds described herein may be usedalone or in combination with other compounds useful for treatinghepatitis B, including those compounds that may be therapeuticallyeffective by the same or different modes of action. In addition, it isappreciated herein that the compounds described herein may be used incombination with other compounds that are administered to treat othersymptoms of hepatitis B.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 shows the binding of a heteroaryldihydropyrimidine in ahydrophobic groove in the C chain of a capsid protein of hepatitis Bvirus (HBV).

FIG. 2 shows a heteroaryldihydropyrimidine intercalating between a Cchain and D chain of the HBV capsid proteins

FIG. 3 shows another view of the heteroaryldihydropyrimidineintercalating between a C chain and D chain of the HBV capsid proteinsas shown in FIG. 2.

DETAILED DESCRIPTION

Several illustrative embodiments of the invention are described by thefollowing enumerated clauses:

1. A compound having the formula

or a pharmaceutically acceptable salt thereof, wherein

Ar¹ is selected from the group consisting of phenyl, 2-pyridyl,3-pyridyl, and 4-pyridyl;

R¹ is hydrogen or pro-drug forming group;

Ak is alkylene;

Z is

where X is CHN₃, C═O, C═NR⁵, C(O)NR^(N), or NR^(N), where R⁵ is hydroxyor a derivative thereof or amino and derivatives thereof, and R^(N) isselected from the group consisting of alkyl, alkenyl, alkynyl,heteroalkyl, alkylaryl, alkylheteroaryl, C(O)alkyl, C(O)heteroalkyl,C(O)alkoxyl, C(O)alkynyl, C(O)alkylacylamino, andC(O)heteroalkylacylamino, each of which is optionally substituted;

R⁴ is alkyl, heteroalkyl, alkenyl, or alkynyl, each of which isoptionally substituted;

Y is O, or HN;

R^(A) represents from 0 to 3 substituents independently in eachinstance, halo or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted;

R^(B) represents from 0 to 3 substituents independently in eachinstance, halogen or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted; and where the compound is not

2. A compound having the formula

or a pharmaceutically acceptable salt thereof, wherein;

Ar² is aryl or heteroaryl each of which is optionally substituted;

R¹ is independently in each instance selected from the group consistingof hydrogen and pro-drug forming group;

R⁴ is alkyl, heteroalkyl, alkenyl, or alkynyl, each of which isoptionally substituted;

Y is O, or HN;

R⁶ is in each instance independently selected from the group consistingof hydrogen and Ak-Z¹, where Ak is alkyl, and Z¹ is independently ineach instance hydrogen or NR²R³; where R² and R³ are independently ineach instance hydrogen, or selected from the group consisting of alkyl,cycloalkyl, heteroalkyl and heterocycloalkyl, each of which isoptionally substituted, or

R² and R³ are taken together with the attached nitrogen to form

X is CHN₃, C═O, C(O)NR^(N), C═NR⁵, where R⁵ is hydroxy or a derivativesthereof or amino or a derivative thereof; or NR^(Na), where R^(Na) ishydrogen or selected from the group consisting of alkyl, alkenyl,alkynyl, heteroalkyl, alkylaryl, alkylheteroaryl, C(O)alkyl,C(O)heteroalkyl, C(O)alkoxyl, C(O)alkynyl, C(O)alkylacylamino, andC(O)heteroalkylacylamino, each of which is optionally substituted;

Ak¹ is (CH₂)n, where n is 1 to 4;

R^(A) represents from 0 to 3 substituents independently in eachinstance, halo or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted; and

R^(B) represents from 0 to 3 substituents independently in eachinstance, halogen or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted.

3. The compound of clause 1 or 2 to wherein R^(A) represents2-c-4-fluoro.

4. The compound of clause 1 wherein Ar¹ is 2-pyridyl.

5. The compound of any one of clauses 1 to 4 wherein R^(B) is absent.

6. The compound of any one of clauses 1 to 5 wherein Y is O.

7. The compound of any one of clauses 1 to 6 wherein R⁴ is methyl.

8. The compound of clause 2 wherein R⁶ is methyl.

9. The compound of clause 2 wherein R⁶ is

where X is CHN₃, C═O, C(O)NR^(N), C═NR⁵, where R⁵ is hydroxy or aderivative thereof or amino or a derivative thereof; or NR^(N), whereR^(N) is independently in each instance hydrogen or selected from thegroup consisting of alkyl, alkenyl, alkynyl, heteroalkyl, alkylaryl,alkylheteroaryl, C(O)alkyl, or C(O)heteroalkyl, C(O)alkylacylamino, andC(O)heteroalkylacylamino, each of which is optionally substituted.

10. The compound of clause 1 where in Ak is methylene; and Z is

where X is CHN₃, C═O, C(O)NR^(N), C═NR⁵, where R⁵ is hydroxy andderivatives thereof or amino and derivatives thereof; or NR^(N), whereR^(N) is independently in each instance hydrogen or selected from thegroup consisting of alkyl, alkenyl, alkynyl, heteroalkyl, alkylaryl,alkylheteroaryl, C(O)alkyl, or C(O)heteroalkyl, C(O)alkylacylamino, andC(O)heteroalkylacylamino, each of which is optionally substituted.

11. The compound of clause 10 wherein X is C═O, C(O)NR^(N), or NR^(N),where R^(N) is independently in each instance hydrogen or selected fromthe group consisting of alkyl, alkenyl, alkynyl, heteroalkyl, alkylaryl,alkylheteroaryl, C(O)alkyl, C(O)heteroalkyl, C(O)alkylacylamino, andC(O)heteroalkylacylamino, each of which is optionally substituted.

11.1 The compound of clause 9 wherein X is C═O, C(O)NR^(Na), or NR^(Na),where R^(Na) is independently in each instance hydrogen or selected fromthe group consisting of alkyl, alkenyl, alkynyl, heteroalkyl, alkylaryl,alkylheteroaryl, C(O)alkyl, C(O)heteroalkyl, C(O)alkylacylamino, andC(O)heteroalkylacylamino, each of which is optionally substituted.

11.2 The compound of clause 11 or 11.1 wherein X is N═OH.

11.3 The compound of clause 11 or 11.1 wherein X is C(O)NH.

12. The compound of clause 11 or 11.1 wherein X is C═O.

13. A pharmaceutical composition comprising a therapeutically effectiveamount of one or more compounds of any one of clauses 1 to 12 fortreating hepatitis B.

14. The composition of clause 13 further comprising one or morecarriers, diluents, or excipients, or a combination thereof.

15. A method for treating hepatitis B, the method comprising the step ofadministering to a patient in need of relief from hepatitis B thecomposition of clauses 13 or 14 or a therapeutically effective amount ofone or more compounds of any one of clauses 1 to 12.

15. A method for treating a patient in need of relief from infection byhepatitis B virus, the method comprising the step of administering tothe patient the composition of claims 13 or 14 or a therapeuticallyeffective amount of one or more compounds of any one of claims 1 to 12.

16. The method of clause 15 wherein the treating includes amelioratingsymptoms or inhibiting chronic infection by hepatitis B virus.

17. The method of clause 15 wherein the infection is a chronicinfections

18. The method of clause 15 wherein the infection is an acute infection.

19. The method of clause 17 or 18 wherein the compound acts byactivating assembly of the virus core disrupting the normal timing ofvirus production in an infected cell.

18. The method of clause 17 or 18 wherein the compound acts byactivating assembly of the virus core disrupting the normal timing ofvirus production in an infected cell.

19. The method of clause 17 or 18 wherein the compound acts bystabilizing existing capsids inhibiting dissociation of the virus coreand release of its genome in the nucleus.

20. A compound having the formula

or a pharmaceutically acceptable salt thereof is described, wherein;

Ar³ is aryl or heteroaryl each of which is optionally substituted;

R¹ is independently in each instance selected from the group consistingof hydrogen and pro-drug forming group;

R⁴ is alkyl, heteroalkyl, alkenyl, or alkynyl, each of which isoptionally substituted;

Y is O, or HN;

R⁶ is in each instance independently selected from the group consistingof hydrogen and Ak-Z¹, where Ak is alkylene, and Z¹ is independently ineach instance hydrogen or NR²R³; where R² and R³ are independently ineach instance hydrogen, or selected from the group consisting of alkyl,cycloalkyl, heteroalkyl and heterocycloalkyl, each of which isoptionally substituted, or

R² and R³ are taken together with the attached nitrogen to form

X is CHN₃, C═O, C(O)NR^(N), C═NR⁵, where R⁵ is hydroxy and derivativesthereof or amino and derivatives thereof; or NR^(N), where R^(N) isindependently in each instance hydrogen or selected from the groupconsisting of alkyl, alkenyl, alkynyl, heteroalkyl, alkylaryl,alkylheteroaryl, C(O)alkyl, or C(O)heteroalkyl, C(O)alkylacylamino, orC(O)heteroalkylacylamino, each of which is optionally substituted;

L is

R⁷ is Ar⁴L² or

where Ar⁴ is optionally substituted aryl or heteroaryl, and L² is C(O)O,C(O)NH, or S(O)₂NH

Ak¹ is (CH₂)n, where n is 1 to 4;

R^(A) represents from 0 to 3 substituents independently in eachinstance, halo or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted; and

R^(B) represents from 0 to 3 substituents independently in eachinstance, halogen or selected from the group consisting of alkyl,heteroalkyl, aryl, heteroaryl, amino and derivatives thereof, andhydroxyl and derivatives thereof, each of which is optionallysubstituted.

21. A pharmaceutical composition comprising a therapeutically effectiveamount of one or more compounds of clause 20 for treating hepatitis B.

22. A method for treating a patient in need of relief from infection byhepatitis B virus, the method comprising the step of administering tothe patient the composition of clause 21 or a therapeutically effectiveamount of one or more compounds of clause 21.

23. A composition comprising one or more compounds of any one of clauses1 to 12 or 20 for treating hepatitis B.

Several additional illustrative embodiments of the invention aredescribed by the following enumerated clauses:

101. A compound of the formula

or a pharmaceutically acceptable salt thereof, wherein

Ar¹ is selected from the group consisting of phenyl, 2-pyridyl,3-pyridyl, and 4-pyridyl;

R¹ is hydrogen or pro-drug forming group;

Ak is alkylene;

Z is

where X is CHN₃, C═O, C═NR⁵, —C(O)N(R^(N))—, or NR^(N), where R⁵ ishydroxy or a derivative thereof or amino or a derivative thereof, andR^(N) is selected from the group consisting of alkyl, alkenyl, alkynyl,heteroalkyl, arylalkyl, heteroarylalkyl, alkyl-C(O), heteroalkyl-C(O),alkoxyl-C(O), alkynyl-C(O), alkylacylamino-C(O), andheteroalkylacylamino-C(O), each of which is optionally substituted;

R⁴ is alkyl, heteroalkyl, alkenyl, or alkynyl, each of which isoptionally substituted;

Y is O, or HN;

R^(A) represents from 0 to 3 substituents independently selected in eachinstance from the group consisting of halo, and alkyl, heteroalkyl,aryl, heteroaryl, amino and derivatives thereof, and hydroxyl andderivatives thereof, each of which is optionally substituted;

R^(B) represents from 0 to 3 substituents independently selected in eachinstance from the group consisting of halo, and alkyl, heteroalkyl,aryl, heteroaryl, amino and derivatives thereof, and hydroxyl andderivatives thereof, each of which is optionally substituted; and wherethe compound is not

102. The compound of clause 101 wherein R^(A) represents2-cholor-4-fluoro.

103. The compound of any one of the preceding clauses wherein Ar¹ is2-pyridyl.

104. The compound of any one of the preceding clauses wherein R^(D)represents 0 substituents.

105. The compound of any one of the preceding clauses wherein Y is O.

106. The compound of any one of the preceding clauses wherein R⁴ ismethyl.

107. The compound of any one of the preceding clauses where in Ak ismethylene.

108. The compound of any one of the preceding clauses wherein X is C═O,—C(O)N(R^(N))—, or NR^(N).

109. The compound of any one of the preceding clauses wherein X is C═O.

110. A compound of the formula

or a pharmaceutically acceptable salt thereof, wherein;

Ar² is aryl or heteroaryl;

R¹ is hydrogen or a pro-drug forming group;

R⁴ is alkyl, heteroalkyl, alkenyl, or alkynyl, each of which isoptionally substituted;

Y is O, or HN;

R⁶ is in each instance independently selected from the group consistingof hydrogen and Ak-Z¹, where Ak is alkylene, and Z¹ is hydrogen orNR²R³; where R² and R³ are independently in each instance selected fromthe group consisting of hydrogen, and alkyl, cycloalkyl, heteroalkyl andheterocycloalkyl, each of which is optionally substituted, or

R² and R³ are taken together with the attached nitrogen to form

wherein X is CHN₃, C═O, —C(O)N(R^(Na))—, C═NR⁵, or NR^(Na); where R⁵ ishydroxy or a derivative thereof or amino or a derivative thereof; andR^(Na) is selected from the group consisting of hydrogen, and alkyl,alkenyl, alkynyl, heteroalkyl, arylalkyl, heteroarylalkyl, alkyl-C(O),heteroalkyl-C(O), alkoxyl-C(O), alkynyl-C(O), alkylacylamino-C(O), andheteroalkylacylamino-C(O), each of which is optionally substituted;

Ak¹ is (CH₂)n, where n is 1 to 4;

R^(A) represents from 0 to 3 substituents independently selected in eachinstance from the group consisting of halo, and alkyl, heteroalkyl,aryl, heteroaryl, amino and derivatives thereof, and hydroxyl andderivatives thereof, each of which is optionally substituted; and

R^(B) represents from 0 to 3 substituents independently selected in eachinstance from the group consisting of halo, and alkyl, heteroalkyl,aryl, heteroaryl, amino and derivatives thereof, and hydroxyl andderivatives thereof, each of which is optionally substituted.

111. The compound of clause 110 wherein R⁶ is methyl.

112. The compound of clause 110 or 111 wherein R⁶ is

where X is CHN₃, C═O, —C(O)N(R^(Na))—, C═NR⁵, or NR^(Na); where R⁵ ishydroxy or a derivative thereof or amino or a derivative thereof; andR^(Na) is hydrogen or alkyl, alkenyl, alkynyl, heteroalkyl, arylalkyl,heteroarylalkyl, alkyl-C(O), heteroalkyl-C(O), alkoxyl-C(O),alkynyl-C(O), alkylacylamino-C(O), or heteroalkylacylamino-C(O), each ofwhich is optionally substituted.

113. The compound of any one of clauses 110 to 112 wherein X is C═O,—C(O)N(R^(Na)), or NR^(Na), where R^(Na) is hydrogen or alkyl, alkenyl,alkynyl, heteroalkyl, arylalkyl, heteroarylalkyl, alkyl-C(O),heteroalkyl-C(O), alkylacylamino-C(O), and heteroalkylacylamino-C(O),each of which is optionally substituted.

114. The compound of any one of clauses 110 to 113 wherein X is C═O.

115. A pharmaceutical composition comprising a therapeutically effectiveamount of one or more compounds of any one of the preceding clauses fortreating hepatitis B.

116. The composition of clause 115 further comprising one or morecarriers, diluents, or excipients, or a combination thereof.

117. A method for treating a patient in need of relief from infection byhepatitis B virus, the method comprising the step of administering tothe patient a therapeutically effective amount of one or more compoundsof any one of the preceding compound or composition clauses.

118. The method of clause 117 wherein the treating includes amelioratingsymptoms or inhibiting chronic infection by hepatitis B virus.

119. The method of clause 117 or 118 wherein the infection is a chronicinfection.

120. The method of clause 117 or 118 wherein the infection is an acuteinfection.

121. The method of any one of the preceding method clauses wherein thecompound acts by activating assembly of the virus core disrupting thenormal timing of virus production in an infected cell.

122. The method of any one of the preceding method clauses wherein thecompound acts by stabilizing existing capsids in an infected cellinhibiting dissociation of the virus core and release of the viralgenome in the cell nucleus.

123. The method of any one of the preceding method clauses wherein thecompound affects the viral lifecycle by inducing assembly of the viralcore lowering the concentration of unassembled hepatitis B virus capsinprotein and inhibiting a non-structural activity of the capsid protein.

124. The method of any one of the preceding method clauses wherein thecompound acts on the viral lifecycle by binding to free capsid proteindimer inhibiting a capsid protein non-structural activity.

In each of the foregoing and following embodiments, it is to beunderstood that the formulae include and represent not only allpharmaceutically acceptable salts of the compounds, but also include anyand all hydrates and/or solvates of the compound formulae. It isappreciated that certain functional groups, such as the hydroxy, amino,and like groups form complexes and/or coordination compounds with waterand/or various solvents, in the various physical forms of the compounds.Accordingly, the above formulae are to be understood to include andrepresent those various hydrates and/or solvates. In each of theforegoing and following embodiments, it is also to be understood thatthe formulae include and represent each possible isomer, such asstereoisomers and geometric isomers, both individually and in any andall possible mixtures. In each of the foregoing and followingembodiments, it is also to be understood that the formulae include andrepresent any and all crystalline forms, partially crystalline forms,and non crystalline and/or amorphous forms of the compounds.

In another embodiment, the following illustrative compounds are adescribed.

Illustrative derivatives include, but are not limited to, both thosecompounds that may be synthetically prepared from the compoundsdescribed herein, as well as those compounds that may be prepared in asimilar way as those described herein, but differing in the selection ofstarting materials. In addition, it is to be understood that derivativesof those compounds also include the compounds having those same ordifferent functional groups at different positions on the aromatic ring.Similarly, derivatives include parallel variations of other functionalgroups on the compounds described herein, such as R^(A), R^(B), and thelike.

It is to be understood that such derivatives may include prodrugs of thecompounds described herein, compounds described herein that include oneor more protection or protecting groups, including compounds that areused in the preparation of other compounds described herein.

It is to be understood that each of the foregoing embodiments may becombined in chemically relevant ways to generate subsets of theembodiments described herein. Accordingly, it is to be furtherunderstood that all such subsets are also illustrative embodiments ofthe invention described herein

The compounds described herein may contain one or more chiral centers,or may otherwise be capable of existing as multiple stereoisomers. It isto be understood that in one embodiment, the invention described hereinis not limited to any particular stereochemical requirement, and thatthe compounds, and compositions, methods, uses, and medicaments thatinclude them may be optically pure, or may be any of a variety ofstereoisomeric mixtures, including racemic and other mixtures ofenantiomers, other mixtures of diastereomers, and the like. It is alsoto be understood that such mixtures of stereoisomers may include asingle stereochemical configuration at one or more chiral centers, whileincluding mixtures of stereochemical configuration at one or more otherchiral centers.

Similarly, the compounds described herein may include geometric centers,such as cis, trans, E, and Z double bonds. It is to be understood thatin another embodiment, the invention described herein is not limited toany particular geometric isomer requirement, and that the compounds, andcompositions, methods, uses, and medicaments that include them may bepure, or may be any of a variety of geometric isomer mixtures. It isalso to be understood that such mixtures of geometric isomers mayinclude a single configuration at one or more double bonds, whileincluding mixtures of geometry at one or more other double bonds.

As used herein, the term “alkyl” includes a chain of carbon atoms, whichis optionally branched. As used herein, the term “alkenyl” and “alkynyl”includes a chain of carbon atoms, which is optionally branched, andincludes at least one double bond or triple bond, respectively. It is tobe understood that alkynyl may also include one or more double bonds. Itis to be understood that in certain embodiments, each of the forgoingmay be univalent (i.e. attached to the remainder of the formula via oneattachment) or multivalent (i.e. attached to the remainder of theformula via more than one attachment). It is to be further understoodthat in certain embodiments, alkyl is advantageously of limited length,including C₁-C₂₄, C₁-C₁₂, C₁-C₈, C₁-C₆, and C₁-C₄. It is to be furtherunderstood that in certain embodiments alkenyl and/or alkynyl may eachbe advantageously of limited length, including C₂-C₂₄, C₂-C₁₂, C₂-C₈,C₂-C₆, and C₂-C₄. It is appreciated herein that shorter alkyl, alkenyl,and/or alkynyl groups may add less lipophilicity to the compound andaccordingly will have different pharmacokinetic behavior. Illustrativealkyl groups are, but not limited to, methyl, ethyl, n-propyl,isopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, pentyl, 2-pentyl,3-pentyl, neopentyl, hexyl, heptyl, octyl and the like.

As used herein, the term “cycloalkyl” includes a chain of carbon atoms,which is optionally branched, where at least a portion of the chain iscyclic. It is to be understood that cycloalkylalkyl is a subset ofcycloalkyl. It is to be understood that cycloalkyl may be polycyclic.Illustrative cycloalkyl include, but are not limited to, cyclopropyl,cyclopentyl, cyclohexyl, 2-methylcyclopropyl, cyclopentyleth-2-yl,adamantyl, and the like. As used herein, the term “cycloalkenyl”includes a chain of carbon atoms, which is optionally branched, andincludes at least one double bond, where at least a portion of the chainin cyclic. It is to be understood that the one or more double bonds maybe in the cyclic portion of cycloalkenyl and/or the non-cyclic portionof cycloalkenyl. It is to be understood that cycloalkenylalkyl andcycloalkylalkenyl are each subsets of cycloalkenyl. It is to beunderstood that cycloalkyl may be polycyclic. It is to be understoodthat in certain embodiments, each of the forgoing may be univalent (i.e.attached to the remainder of the formula via one attachment) ormultivalent (i.e. attached to the remainder of the formula via more thanone attachment). Illustrative cycloalkenyl include, but are not limitedto, cyclopentenyl, cyclohexylethen-2-yl, cycloheptenylpropenyl, and thelike. It is to be further understood that chain forming cycloalkyland/or cycloalkenyl is advantageously of limited length, includingC₃-C₂₄, C₃-C₁₂, C₃-C₈, C₃-C₆, and C₅-C₆. It is appreciated herein thatshorter alkyl and/or alkenyl chains forming cycloalkyl and/orcycloalkenyl, respectively, may add less lipophilicity to the compoundand accordingly will have different pharmacokinetic behavior.

As used herein, the term “heteroalkyl” includes a chain of atoms thatincludes both carbon and at least one heteroatom, and is optionallybranched. Illustrative heteroatoms include nitrogen, oxygen, and sulfur.In certain variations, illustrative heteroatoms also include phosphorus,and selenium. As used herein, the term “cycloheteroalkyl” includingheterocyclyl and heterocycle, includes a chain of atoms that includesboth carbon and at least one heteroatom, such as heteroalkyl, and isoptionally branched, where at least a portion of the chain is cyclic.Illustrative heteroatoms include nitrogen, oxygen, and sulfur. It is tobe understood that in certain embodiments, each of the forgoing may beunivalent (i.e. attached to the remainder of the formula via oneattachment) or multivalent (i.e. attached to the remainder of theformula via more than one attachment). In certain variations,illustrative heteroatoms also include phosphorus, and selenium.Illustrative cycloheteroalkyl include, but are not limited to,tetrahydrofuryl, pyrrolidinyl, tetrahydropyranyl, piperidinyl,morpholinyl, piperazinyl, homopiperazinyl, quinuclidinyl, and the like.

As used herein, the term “aryl” includes monocyclic and polycyclicaromatic carbocyclic groups, each of which may be optionallysubstituted. Illustrative aromatic carbocyclic groups described hereininclude, but are not limited to, phenyl, naphthyl, and the like. As usedherein, the term “heteroaryl” includes aromatic heterocyclic groups,each of which may be optionally substituted. Illustrative aromaticheterocyclic groups include, but are not limited to, pyridinyl,pyrimidinyl, pyrazinyl, triazinyl, tetrazinyl, quinolinyl, quinazolinyl,quinoxalinyl, thienyl, pyrazolyl, imidazolyl, oxazolyl, thiazolyl,isoxazolyl, isothiazolyl, oxadiazolyl, thiadiazolyl, triazolyl,benzimidazolyl, benzoxazolyl, benzthiazolyl, benzisoxazolyl,benzisothiazolyl, and the like.

As used herein, the term “amino” includes the group NH₂, alkylamino, anddialkylamino, where the two alkyl groups in dialkylamino may be the sameor different, i.e. alkylalkylamino. Illustratively, amino includesmethylamino, ethylamino, dimethylamino, methylethylamino, and the like.In addition, it is to be understood that when amino modifies or ismodified by another term, such as aminoalkyl, or acylamino, the abovevariations of the term amino are included therein. Illustratively,aminoalkyl includes H₂N-alkyl, methylaminoalkyl, ethylaminoalkyl,dimethylaminoalkyl, methylethylaminoalkyl, and the like. Illustratively,acylamino includes acylmethylamino, acylethylamino, and the like.

As used herein, the term “amino and derivatives thereof” includes aminoas described herein, and alkylamino, alkenylamino, alkynylamino,heteroalkylamino, heteroalkenylamino, heteroalkynylamino,cycloalkylamino, cycloalkenylamino, cycloheteroalkylamino,cycloheteroalkenylamino, arylamino, arylalkylamino, arylalkenylamino,arylalkynylamino, heteroarylamino, heteroarylalkylamino,heteroarylalkenylamino, heteroarylalkynylamino, acylamino, and the like,each of which is optionally substituted. The term “amino derivative”also includes urea, carbamate, and the like.

As used herein, the term “hydroxy and derivatives thereof” includes OH,and alkyloxy, alkenyloxy, alkynyloxy, heteroalkyloxy, heteroalkenyloxy,heteroalkynyloxy, cycloalkyloxy, cycloalkenyloxy, cycloheteroalkyloxy,cycloheteroalkenyloxy, aryloxy, arylalkyloxy, arylalkenyloxy,arylalkynyloxy, heteroaryloxy, heteroarylalkyloxy, heteroarylalkenyloxy,heteroarylalkynyloxy, acyloxy, and the like, each of which is optionallysubstituted. The term “hydroxy derivative” also includes carbamate, andthe like.

As used herein, the term “thio and derivatives thereof” includes SH, andalkylthio, alkenylthio, alkynylthio, heteroalkylthio, heteroalkenylthio,heteroalkynylthio, cycloalkylthio, cycloalkenylthio,cycloheteroalkylthio, cycloheteroalkenylthio, arylthio, arylalkylthio,arylalkenylthio, arylalkynylthio, heteroarylthio, heteroarylalkylthio,heteroarylalkenylthio, heteroarylalkynylthio, acylthio, and the like,each of which is optionally substituted. The term “thio derivative” alsoincludes thiocarbamate, and the like.

As used herein, the term “acyl” includes formyl, and alkylcarbonyl,alkenylcarbonyl, alkynylcarbonyl, heteroalkylcarbonyl,heteroalkenylcarbonyl, heteroalkynylcarbonyl, cycloalkylcarbonyl,cycloalkenylcarbonyl, cycloheteroalkylcarbonyl,cycloheteroalkenylcarbonyl, arylcarbonyl, arylalkylcarbonyl,arylalkenylcarbonyl, arylalkynylcarbonyl, heteroarylcarbonyl,heteroarylalkylcarbonyl, heteroarylalkenylcarbonyl,heteroarylalkynylcarbonyl, acylcarbonyl, and the like, each of which isoptionally substituted.

As used herein, the term “carbonyl and derivatives thereof” includes thegroup C(O), C(S), C(NH) and substituted amino derivatives thereof.

As used herein, the term “carboxylate and derivatives thereof” includesthe group CO₂H and salts thereof, and esters and amides thereof, and CN.

As used herein, the term “sulfinyl or a derivative thereof” includesSO₂H and salts thereof, and esters and amides thereof.

As used herein, the term “sulfonyl or a derivative thereof” includesSO₃H and salts thereof, and esters and amides thereof.

As used herein, the term “phosphinyl or a derivative thereof” includesP(R)O₂H and salts thereof, and esters and amides thereof, where R isalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, heteroalkyl,heteroalkenyl, cycloheteroalkyl, cycloheteroalkenyl, aryl, heteroaryl,arylalkyl, or heteroarylalkyl, each of which is optionally substituted.

As used herein, the term “phosphonyl or a derivative thereof” includesPO₃H₂ and salts thereof, and esters and amides thereof.

As used herein, the term “hydroxylamino and derivatives thereof”includes NHOH, and alkyloxylNH alkenyloxylNH alkynyloxylNHheteroalkyloxylNH heteroalkenyloxylNH heteroalkynyloxylNHcycloalkyloxylNH cycloalkenyloxylNH cycloheteroalkyloxylNHcycloheteroalkenyloxylNH aryloxylNH arylalkyloxylNH arylalkenyloxylNHarylalkynyloxylNH heteroaryloxylNH heteroarylalkyloxylNHheteroarylalkenyloxylNH heteroarylalkynyloxylNH acyloxy, and the like,each of which is optionally substituted.

As used herein, the term “hydrazino and derivatives thereof” includesalkylNHNH, alkenylNHNH, alkynylNHNH, heteroalkylNHNH, heteroalkenylNHNH,heteroalkynylNHNH, cycloalkylNHNH, cycloalkenylNHNH,cycloheteroalkylNHNH, cycloheteroalkenylNHNH, arylNHNH, arylalkylNHNH,arylalkenylNHNH, arylalkynylNHNH, heteroarylNHNH, heteroarylalkylNHNH,heteroarylalkenylNHNH, heteroarylalkynylNHNH, acylNHNH, and the like,each of which is optionally substituted.

The term “optionally substituted” as used herein includes thereplacement of hydrogen atoms with other functional groups on theradical that is optionally substituted. Such other functional groupsillustratively include, but are not limited to, amino, hydroxyl, halo,thiol, azido, alkyl, haloalkyl, heteroalkyl, aryl, arylalkyl,arylheteroalkyl, heteroaryl, heteroarylalkyl, heteroarylheteroalkyl,nitro, sulfonic acids and derivatives thereof, carboxylic acids andderivatives thereof, and the like. Illustratively, any of amino,hydroxyl, thiol, alkyl, haloalkyl, heteroalkyl, aryl, arylalkyl,arylheteroalkyl, heteroaryl, heteroarylalkyl, heteroarylheteroalkyl,and/or sulfonic acid is optionally substituted.

As used herein, the terms “optionally substituted aryl” and “optionallysubstituted heteroaryl” include the replacement of hydrogen atoms withother functional groups on the aryl or heteroaryl that is optionallysubstituted. Such other functional groups illustratively include, butare not limited to, amino, azido, hydroxy, halo, thio, alkyl, haloalkyl,heteroalkyl, aryl, arylalkyl, arylheteroalkyl, heteroaryl,heteroarylalkyl, heteroarylheteroalkyl, nitro, sulfonic acids andderivatives thereof, carboxylic acids and derivatives thereof, and thelike. Illustratively, any of amino, hydroxy, thio, alkyl, haloalkyl,heteroalkyl, aryl, arylalkyl, arylheteroalkyl, heteroaryl,heteroarylalkyl, heteroarylheteroalkyl, and/or sulfonic acid isoptionally substituted.

Illustrative substituents include, but are not limited to, a radical—(CH₂)_(x)Z^(X), where x is an integer from 0-6 and Z^(X) is selectedfrom halogen, hydroxy, alkanoyloxy, including C₁-C₆ alkanoyloxy,optionally substituted aroyloxy, alkyl, including C₁-C₆ alkyl, alkoxy,including C₁-C₆ alkoxy, cycloalkyl, including C₃-C₈ cycloalkyl,cycloalkoxy, including C₃-C₈ cycloalkoxy, alkenyl, including C₂-C₆alkenyl, alkynyl, including C₂-C₆ alkynyl, haloalkyl, including C₁-C₆haloalkyl, haloalkoxy, including C₁-C₆ haloalkoxy, halocycloalkyl,including C₃-C₈ halocycloalkyl, halocycloalkoxy, including C₃-C₈halocycloalkoxy, amino, C₁-C₆ alkylamino, (C₁-C₆ alkyl)(C₁-C₆alkyl)amino, alkylcarbonylamino, N—(C₁-C₆ alkyl)alkylcarbonylamino,aminoalkyl, C₁-C₆ alkylaminoalkyl, (C₁-C₆ alkyl)(C₁-C₆ alkyl)aminoalkyl,alkylcarbonylaminoalkyl, N—(C₁-C₆ alkyl)alkylcarbonylaminoalkyl, cyano,azido, and nitro; or Z^(X) is selected from —CO₂R⁴ and —CONR⁵R⁶, whereR⁴, R⁵, and R⁶ are each independently selected in each occurrence fromhydrogen, C₁-C₆ alkyl, aryl-C₁-C₆ alkyl, and heteroaryl-C₁-C₆ alkyl.

The term “prodrug” as used herein generally refers to any compound thatwhen administered to a biological system generates a biologically activecompound as a result of one or more spontaneous chemical reaction(s),enzyme-catalyzed chemical reaction(s), and/or metabolic chemicalreaction(s), or a combination thereof. In vivo, the prodrug is typicallyacted upon by an enzyme (such as esterases, amidases, phosphatases, andthe like), simple biological chemistry, or other process in vivo toliberate or regenerate the more pharmacologically active drug. Thisactivation may occur through the action of an endogenous host enzyme ora non-endogenous enzyme that is administered to the host preceding,following, or during administration of the prodrug. Additional detailsof prodrug use are described in U.S. Pat. No. 5,627,165; and Pathalk etal., Enzymic protecting group techniques in organic synthesis,Stereosel. Biocatal. 775-797 (2000). It is appreciated that the prodrugis advantageously converted to the original drug as soon as the goal,such as targeted delivery, safety, stability, and the like is achieved,followed by the subsequent rapid elimination of the released remains ofthe group forming the prodrug.

Prodrugs may be prepared from the compounds described herein byattaching groups that ultimately cleave in vivo to one or morefunctional groups present on the compound, such as —OH—, —SH, —CO₂H,—NR₂. Illustrative prodrugs include but are not limited to carboxylateesters where the group is alkyl, aryl, arylalkyl, heteroaryl,heteroarylalkyl, acyloxyalkyl, alkoxycarbonyloxyalkyl as well as estersof hydroxyl, thiol and amines where the group attached is an acyl group,an alkoxycarbonyl, aminocarbonyl, phosphate or sulfate. Illustrativeesters, also referred to as active esters, include but are not limitedto 1-indanyl, N-oxysuccinimide; acyloxyalkyl groups such asacetoxymethyl, pivaloyloxymethyl, β-acetoxyethyl, β-pivaloyloxyethyl,1-(cyclohexylcarbonyloxy)prop-1-yl, (1-aminoethyl)carbonyloxymethyl, andthe like; alkoxycarbonyloxyalkyl groups, such asethoxycarbonyloxymethyl, α-ethoxycarbonyloxyethyl,β-ethoxycarbonyloxyethyl, and the like; dialkylaminoalkyl groups,including di-lower alkylamino alkyl groups, such as dimethylaminomethyl,dimethylaminoethyl, diethylaminomethyl, diethylaminoethyl, and the like;2-(alkoxycarbonyl)-2-alkenyl groups such as 2-(isobutoxycarbonyl)pent-2-enyl, 2-(ethoxycarbonyl)but-2-enyl, and the like; and lactonegroups such as phthalidyl, dimethoxyphthalidyl, and the like.

Further illustrative prodrugs contain a chemical moiety, such as anamide or phosphorus group functioning to increase solubility and/orstability of the compounds described herein. Further illustrativeprodrugs for amino groups include, but are not limited to,(C₃-C₂₀)alkanoyl; halo-(C₃-C₂₀)alkanoyl; (C₃-C₂₀)alkenoyl;(C₄-C₇)cycloalkanoyl; (C₃-C₆)-cycloalkyl(C₂-C₁₆)alkanoyl; optionallysubstituted aroyl, such as unsubstituted aroyl or aroyl substituted by 1to 3 substituents selected from the group consisting of halogen, cyano,trifluoromethanesulphonyloxy, (C₁-C₃)alkyl and (C₁-C₃)alkoxy, each ofwhich is optionally further substituted with one or more of 1 to 3halogen atoms; optionally substituted aryl(C₂-C₁₆)alkanoyl andoptionally substituted heteroaryl(C₂-C₁₆)alkanoyl, such as the aryl orheteroaryl radical being unsubstituted or substituted by 1 to 3substituents selected from the group consisting of halogen, (C₁-C₃)alkyland (C₁-C₃)alkoxy, each of which is optionally further substituted with1 to 3 halogen atoms; and optionally substituted heteroarylalkanoylhaving one to three heteroatoms selected from O, S and N in theheteroaryl moiety and 2 to 10 carbon atoms in the alkanoyl moiety, suchas the heteroaryl radical being unsubstituted or substituted by 1 to 3substituents selected from the group consisting of halogen, cyano,trifluoromethanesulphonyloxy, (C₁-C₃)alkyl, and (C₁-C₃)alkoxy, each ofwhich is optionally further substituted with 1 to 3 halogen atoms. Thegroups illustrated are exemplary, not exhaustive, and may be prepared byconventional processes.

It is understood that the prodrugs themselves may not possesssignificant biological activity, but instead undergo one or morespontaneous chemical reaction(s), enzyme-catalyzed chemical reaction(s),and/or metabolic chemical reaction(s), or a combination thereof afteradministration in vivo to produce the compound described herein that isbiologically active or is a precursor of the biologically activecompound. However, it is appreciated that in some cases, the prodrug isbiologically active. It is also appreciated that prodrugs may oftenserves to improve drug efficacy or safety through improved oralbioavailability, pharmacodynamic half-life, and the like. Prodrugs alsorefer to derivatives of the compounds described herein that includegroups that simply mask undesirable drug properties or improve drugdelivery. For example, one or more compounds described herein mayexhibit an undesirable property that is advantageously blocked orminimized may become pharmacological, pharmaceutical, or pharmacokineticbarriers in clinical drug application, such as low oral drug absorption,lack of site specificity, chemical instability, toxicity, and poorpatient acceptance (bad taste, odor, pain at injection site, and thelike), and others. It is appreciated herein that a prodrug, or otherstrategy using reversible derivatives, can be useful in the optimizationof the clinical application of a drug.

It is to be understood that the embodiments described herein may becombined in all possible chemically relevant ways.

The term “therapeutically effective amount” as used herein, refers tothat amount of active compound or pharmaceutical agent that elicits thebiological or medicinal response in a tissue system, animal or humanthat is being sought by a researcher, veterinarian, medical doctor orother clinician, which includes alleviation of the symptoms of thedisease or disorder being treated. In one aspect, the therapeuticallyeffective amount is that which may treat or alleviate the disease orsymptoms of the disease at a reasonable benefit/risk ratio applicable toany medical treatment. However, it is to be understood that the totaldaily usage of the compounds and compositions described herein may bedecided by the attending physician within the scope of sound medicaljudgment. The specific therapeutically-effective dose level for anyparticular patient will depend upon a variety of factors, including thedisorder being treated and the severity of the disorder, activity of thespecific compound employed; the specific composition employed; the age,body weight, general health, gender and diet of the patient: the time ofadministration, route of administration, and rate of excretion of thespecific compound employed; the duration of the treatment; drugs used incombination or coincidentally with the specific compound employed; andlike factors well known to the researcher, veterinarian, medical doctoror other clinician of ordinary skill.

It is also appreciated that the therapeutically effective amount,whether referring to monotherapy or combination therapy, isadvantageously selected with reference to any toxicity, or otherundesirable side effect, that might occur during administration of oneor more of the compounds described herein. Further, it is appreciatedthat the co-therapies described herein may allow for the administrationof lower doses of compounds that show such toxicity, or otherundesirable side effect, where those lower doses are below thresholds oftoxicity or lower in the therapeutic window than would otherwise beadministered in the absence of a co-therapy.

As used herein, the term “composition” generally refers to any productcomprising the specified ingredients in the specified amounts, as wellas any product which results, directly or indirectly, from combinationsof the specified ingredients in the specified amounts. It is to beunderstood that the compositions described herein may be prepared fromisolated compounds described herein or from salts, solutions, hydrates,solvates, and other forms of the compounds described herein. It is alsoto be understood that the compositions may be prepared from variousamorphous, non-amorphous, partially crystalline, crystalline, and/orother morphological forms of the compounds described herein. It is alsoto be understood that the compositions may be prepared from varioushydrates and/or solvates of the compounds described herein. Accordingly,such pharmaceutical compositions that recite compounds described hereinare to be understood to include each of, or any combination of, thevarious morphological forms and/or solvate or hydrate forms of thecompounds described herein. Illustratively, compositions may include oneor more carriers, diluents, and/or excipients. The compounds describedherein, or compositions containing them, may be formulated in atherapeutically effective amount in any conventional dosage formsappropriate for the methods described herein. The compounds describedherein, or compositions containing them, including such formulations,may be administered by a wide variety of conventional routes for themethods described herein, and in a wide variety of dosage formats,utilizing known procedures (see generally, Remington: The Science andPractice of Pharmacy, (21^(st) ed., 2005)).

As used herein, the term “treatment” or “treating” means anyadministration of a compound or composition described and includes (1)inhibiting the disease in a patient that is experiencing or displayingthe pathology or symptomatology of infection by HBV (i.e., arrestingfurther development of the pathology and/or symptomatology), (2)ameliorating the disease in a patient that is experiencing or displayingthe pathology or symptomatology of infection by HBV (i.e., reversing orlessening the pathology and/or symptomatology), inhibiting or (4)preventing of chronic infection by HBV. The term “controlling” includespreventing, treating, eradicating, ameliorating or otherwise reducingthe severity of the infection by HBV.

The term “administering” as used herein includes all means ofintroducing the compounds and compositions described herein to thepatient, including, but are not limited to, oral (po), intravenous (iv),intramuscular (im), subcutaneous (sc), transdermal, inhalation, and thelike. The compounds and compositions described herein may beadministered in unit dosage forms and/or formulations containingconventional nontoxic pharmaceutically-acceptable carriers, adjuvants,and vehicles.

Illustrative routes of oral administration include tablets, capsules,elixirs, syrups, and the like.

Illustrative routes for parenteral administration include intravenous,intraarterial, intraperitoneal, epidural, intraurethral, intrasternal,intramuscular and subcutaneous, as well as any other art recognizedroute of parenteral administration.

Illustrative means of parenteral administration include needle(including microneedle) injectors, needle-free injectors and infusiontechniques, as well as any other means of parenteral administrationrecognized in the art. Parenteral formulations are typically aqueoussolutions which may contain excipients such as salts, carbohydrates andbuffering agents (preferably at a pH in the range from about 3 to about9), but, for some applications, they may be more suitably formulated asa sterile non-aqueous solution or as a dried form to be used inconjunction with a suitable vehicle such as sterile, pyrogen-free water.The preparation of parenteral formulations under sterile conditions, forexample, by lyophilization, may readily be accomplished using standardpharmaceutical techniques well known to those skilled in the art.Parenteral administration of a compound is illustratively performed inthe form of saline solutions or with the compound incorporated intoliposomes. In cases where the compound in itself is not sufficientlysoluble to be dissolved, a solubilizer such as ethanol can be applied.

The dosage of each compound of the claimed combinations depends onseveral factors, including: the administration method, the condition tobe treated, the severity of the condition, whether the condition is tobe treated or prevented, and the age, weight, and health of the personto be treated. Additionally, pharmacogenomic (the effect of genotype onthe pharmacokinetic, pharmacodynamic or efficacy profile of atherapeutic) information about a particular patient may affect thedosage used.

It is to be understood that an effective amount of any one or a mixtureof the compounds described herein can be readily determined by theattending diagnostician or physician by the use of known techniquesand/or by observing results obtained under analogous circumstances. Indetermining the effective amount or dose, a number of factors areconsidered by the attending diagnostician or physician, including, butnot limited to the species of mammal, including human, its size, age,and general health, the specific disease or disorder involved, thedegree of or involvement or the severity of the disease or disorder, theresponse of the individual patient, the particular compoundadministered, the mode of administration, the bioavailabilitycharacteristics of the preparation administered, the dose regimenselected, the use of concomitant medication, and other relevantcircumstances.

In making the pharmaceutical compositions of the compounds describedherein, a therapeutically effective amount of one or more compounds inany of the various forms described herein may be mixed with one or moreexcipients, diluted by one or more excipients, or enclosed within such acarrier which can be in the form of a capsule, sachet, paper, or othercontainer. Excipients may serve as a diluent, and can be solid,semi-solid, or liquid materials, which act as a vehicle, carrier ormedium for the active ingredient.

Some examples of suitable excipients include lactose, dextrose, sucrose,sorbitol, mannitol, starches, gum acacia, calcium phosphate, alginates,tragacanth, gelatin, calcium silicate, microcrystalline cellulose,polyvinylpyrrolidone, cellulose, water, syrup, and methyl cellulose. Theformulations can additionally include: lubricating agents such as talc,magnesium stearate, and mineral oil; wetting agents; emulsifying andsuspending agents; preserving agents such as methyl- andpropylhydroxybenzoates; sweetening agents; and flavoring agents. Thecompositions can be formulated so as to provide quick, sustained ordelayed release of the active ingredient after administration to thepatient by employing procedures known in the art. It is appreciated thatthe carriers, diluents, and excipients used to prepare the compositionsdescribed herein are advantageously GRAS (generally regarded as safe)compounds.

Examples of emulsifying agents are naturally occurring gums (e.g., gumacacia or gum tragacanth) and naturally occurring phosphatides (e.g.,soybean lecithin and sorbitan monoolcate derivatives). Examples ofantioxidants are butylated hydroxy anisole (BHA), ascorbic acid andderivatives thereof, tocopherol and derivatives thereof, butylatedhydroxy anisole, and cysteine. Examples of preservatives are parabens,such as methyl or propyl p-hydroxybenzoate, and benzalkonium chloride.Examples of humectants are glycerin, propylene glycol, sorbitol, andurea. Examples of penetration enhancers are propylene glycol, DMSO,triethanolamine, N,N-dimethylacetamide, N,N-dimethylformamide,2-pyrrolidone and derivatives thereof, tetrahydrofurfuryl alcohol, andAZONE. Examples of chelating agents are sodium EDTA, citric acid, andphosphoric acid. Examples of gel forming agents are CARBOPOL, cellulosederivatives, bentonite, alginates, gelatin and polyvinylpyrrolidone.Examples of ointment bases are beeswax, paraffin, cetyl palmitate,vegetable oils, sorbitan esters of fatty acids (Span), polyethyleneglycols, and condensation products between sorbitan esters of fattyacids and ethylene oxide (e.g., polyoxyethylene sorbitan monooleate(TWEEN)).

Parenteral Compositions. The pharmaceutical composition may also beadministered parenterally by injection, infusion or implantation(intravenous, intramuscular, subcutaneous, or the like) in dosage forms,formulations, or via suitable delivery devices or implants containingconventional, non-toxic pharmaceutically acceptable carriers andadjuvants. The formulation and preparation of such compositions are wellknown to those skilled in the art of pharmaceutical formulation.Formulations can be found in Remington: The Science and Practice ofPharmacy, supra.

Compositions for parenteral use may be provided in unit dosage forms(e.g., in single-dose ampoules), or in vials containing several dosesand in which a suitable preservative may be added (see below). Thecomposition may be in form of a solution, a suspension, an emulsion, aninfusion device, or a delivery device for implantation, or it may bepresented as a dry powder to be reconstituted with water or anothersuitable vehicle before use. Apart from the active drug(s), thecomposition may include suitable parenterally acceptable carriers and/orexcipients. The active drug(s) may be incorporated into microspheres,microcapsules, nanoparticles, liposomes, or the like for controlledrelease. Furthermore, the composition may include suspending,solubilizing, stabilizing, pH-adjusting agents, and/or dispersingagents.

As indicated above, the pharmaceutical compositions described herein maybe in the form suitable for sterile injection. To prepare such acomposition, the suitable active drug(s) are dissolved or suspended in aparenterally acceptable liquid vehicle. Among acceptable vehicles andsolvents that may be employed are water, water adjusted to a suitable pHby addition of an appropriate amount of hydrochloric acid, sodiumhydroxide or a suitable buffer, 1,3-butanediol, Ringer's solution, andisotonic sodium chloride solution. The aqueous formulation may alsocontain one or more preservatives (e.g., methyl, ethyl or n-propylp-hydroxybenzoate). In cases where one of the compounds is onlysparingly or slightly soluble in water, a dissolution enhancing orsolubilizing agent can be added, or the solvent may include 10-60% w/wof propylene glycol or the like.

Controlled Release Parenteral Compositions. Controlled releaseparenteral compositions may be in form of aqueous suspensions,microspheres, microcapsules, magnetic microspheres, oil solutions, oilsuspensions, or emulsions. Alternatively, the active drug(s) may beincorporated in biocompatible carriers, liposomes, nanoparticles,implants, or infusion devices. Materials for use in the preparation ofmicrospheres and/or microcapsules are, e.g., biodegradable/bioerodiblepolymers such as polygalactin, poly-(isobutyl cyanoacrylate),poly(2-hydroxyethyl-L-glutamnine) and, poly(lactic acid). Biocompatiblecarriers that may be used when formulating a controlled releaseparenteral formulation are carbohydrates (e.g., dextrans), proteins(e.g., albumin), lipoproteins, or antibodies. Materials for use inimplants can be non-biodegradable (e.g., polydimethyl siloxane) orbiodegradable (e.g., poly(caprolactone), poly(lactic acid),poly(glycolic acid) or poly(ortho esters)).

The following examples further illustrate specific embodiments of theinvention; however, the following illustrative examples should not beinterpreted in any way to limit the invention.

Examples Synthesis of a Representative HAP Compound

Compound A. A solution of methyl 4-chloroacetoacetate (2.43 mL, 20.0mmol) and 2-chloro-4-fluorobenzaldehyde (3.3 g, 20.2 mmol) in benzene(30 mL) was placed into a round-bottomed flask equipped with aDean-Stark trap. Acetic acid (115 μL, 2.0 mmol) and piperidine (200 μL,2.0 mmol) were added. The mixture was heated at reflux with removal ofazeotroped water for 12 h and the resulting mixture was diluted withether and washed with water and brine. The organic layer was dried overanhydrous Na₂SO₄, and the solvent was removed by rotary evaporation. Theproduct was purified by column chromatography (1:10 EtOAc/hexane) togive A (3.8 g, 66%) as a yellow oil. The NMR data showed the material tobe composed of a 2:1 mixture of isomers. MS (M+H⁺, m/z) 291.

Compound B. To a solution of A (3.8 g, 13.2 mmol) in i-PrOH (30 mL) wasadded 2-amidinopyridinium chloride (2 g, 12.4 mmol) and sodium acetate(123 mg, 1.50 mmol). The mixture was heated at reflux for 12 h, and wasthen cooled, evaporated, and dissolved in a 1:1 mixture of 0.5 M HCl(aq)/EtOAc (60 mL). The organic layer was extracted with 1 M HCl (20mL). The combined aqueous layers were washed with ether, rendered basicwith ammonia solution (36 wt %), and extracted with EtOAc (3×50 mL). Thecombined organic layers were washed with water and brine, dried overanhydrous Na₂SO₄, and evaporated. The product was purified by columnchromatography (1:5 EtOAc/hexane) to give B (2.6 g, 50%) as a yellowsolid. MS (M+H⁺, m/z) 394.

Compound B-120. To a solution of B (30 mg, 0.076 mmol) in DMF (1 mL) wasadded triethylamine (60 μL, 0.43 mmol) followed by 1,4-diazepan-5-one(45 mg, 0.40 mmol). The mixture was stirring for 24 h at roomtemperature. The resulting mixture was diluted with EtOAc and washedwith brine. The organic layer was dried over Na₂SO₄, and evaporation.The product was purified by column chromatography (1:3 EtOAc/hexane) togive 12 (88% yield) as a yellow solid. MS (M+H⁺, m/z) 472.

Antiviral Activity

Antiviral activity was measured using an inducible HBV expressionsystem, AD38 cells. (Ladner, S. K. et al., Antimicrob Agents Chemother41, 1715-20 (1997)). Initial experiments tested the activity of 10 μMHAP (percentage viral assembly at 24 hour). For active molecules,effective concentrations were determined for suppression of HBVproduction by 50% and by 90%; this value is reported in μM. Compoundtoxicity was tested in the parent cell line, HepG2. This is reported asthe concentration required to suppress cell growth by 50%, CC50 (in μM)and as the ratio of CC50/EC50, also known as the therapeutic index. As acontrol and for comparison, the results for the nucleoside analog 3TC(lamivudine) also described. All of these experiments were performedblind, in the laboratory of Raymond Schinazi (Emory University). SeeTABLE I.

TABLE I HepG2, Compound □, Δ-Ct-HBV- % HepAD38 HepAD38 CC50, at 10 μMΔ-Ct-HBV StDev Inhibition EC50, μM EC90, μM μM (YI) B-061 N/A N/A EC50 =0.49 1 >100(>200)  0.55 μM B-070 9.77 0.34 99.88 2.3 5.9 8.4(3.7)  B-0731.5 0.21 64.44 7.6 >10 3.7(0.5)  B-078 −1.01 0.39 <1 B-079 10.45 0.2299.93 1.3 2.9 61(47)  B-080 10.38 0.24 99.92 0.4 2.9 5.8(15)   B-08110.74 0.22 99.94 4.3 8.9 4.5(1.0)  B-083 1.53 0.28 65.28 7.7 >10 18(2.3)  B-089 6.46 0.28 98.84 1.2 5.2 >100(>83)  B-108 4.79 0.19 96.351.3 7.9 >100(>77)  B-110 −0.41 0.2 <1 B-120 9.65 0.57 99.87 0.3 0.9 32(99)  B-121 9 0.27 99.8 0.4 1  19(53)  B-122 1.52 0.28 65.06 6.9 >10  47(6.9)  B-123 0.16 0.18 10.3 B-124 2.87 0.25 86.2 7.6 >10 >100(>11) B-125 1.35 0.18 60.57 B-142 7.74 0.21 99.53 5.9 9.2  5.6(1.0)  3TC(control) 6.17 0.22 98.59 0.06 0.2 >100(>1000)

Fluorescence Quenching Assay

The table below indicates the extent that different HAPs stimulateassembly of HBV. The assay is based on assembly-dependent fluorescencequenching of the labeled core protein, Cp150Bo. 9 (Stray, S. J., et al.,Nat Biotechnol 24, 358-362 (2006); Zlotnick, A., et al., Biochemistry38, 14644-14652 (1999)). A single time point after assembly isinitiated, 24 hr, is presented. The specified HAP was pre-incubated withpurified, labeled HBV core protein dimer for at least 20 minutes.Assembly was then initiated by adding NaCl. The conditions were chosenso that Cp150Bo achieve about 30±15% assembly in the absence ofstimulation. Because different aberrant complexes may lead to greaterquenching than observed in capsid, there are several examples of greaterthan 100% assembly.

Compound Assembly B-6 * 95 B-22 77 B-24 70 B-25 54 B-34 65 B-35 87 B-3692 B-54 21 B-55 60 B-56 15 B-57 49 B-58 42 B-59** 57 B-60** 60 B-61** 51B-1 * 78 B-2 51 B-3 48 B-4 56 B-5 54 B-7 96 B-8 — B-12 83 B-13 55 B-1548 B-16 57 B-17 87 B-18 93 B-19 72 B-20 75 B-21 90 B-26 24 B-23 47 B6784 B68 49 B69 54 B70 123 B71 133 B72 29 B73 69 B74 21 B75 134 B76 36 B7715 B78 75 B79 124 B80 133 B81 129 B82 24 B83 125 B84 63 B101 48 B102 60B103 60 B104 93 B105 86 B106 59 B112 44 B120 96 B121 97 B122 91 B123 77B124 94 B125 86 B142 100 Comparative Examples Follow B-6 * 95 B-22 77B-24 70 B-25 54 B-34 65 B-35 87 B-36 92 B-54 21 B-55 60 B-56 15 B-57 49B-58 42 B-59** 57 B-60** 60 B-61** 51 B61 99 HAP1 59 HAP2 99 HAP-PI 60B-61 80

Comparative compounds are shown below:

1. A compound of the formula

or a pharmaceutically acceptable salt thereof, wherein Ar¹ is selectedfrom the group consisting of phenyl, 2-pyridyl, 3-pyridyl, and4-pyridyl; R¹ is hydrogen or pro-drug forming group; Ak is alkylene; Zis

where X is CHN₃, C═O, C═NR⁵, —C(O)N(R^(N))—, or NR^(N), where R⁵ ishydroxy or a derivative thereof or amino or a derivative thereof, andR^(N) is selected from the group consisting of alkyl, alkenyl, alkynyl,heteroalkyl, arylalkyl, heteroarylalkyl, alkyl-C(O), heteroalkyl-C(O),alkoxyl-C(O), alkynyl-C(O), alkylacylamino-C(O), andheteroalkylacylamino-C(O), each of which is optionally substituted; R⁴is alkyl, heteroalkyl, alkenyl, or alkynyl, each of which is optionallysubstituted; Y is O, or HN; R^(A) represents from 0 to 3 substituentsindependently selected in each instance from the group consisting ofhalo, and alkyl, heteroalkyl, aryl, heteroaryl, amino and derivativesthereof, and hydroxyl and derivatives thereof, each of which isoptionally substituted; R^(B) represents from 0 to 3 substituentsindependently selected in each instance from the group consisting ofhalo, and alkyl, heteroalkyl, aryl, heteroaryl, amino and derivativesthereof, and hydroxyl and derivatives thereof, each of which isoptionally substituted; and where the compound is not


2. The compound of claim 1 wherein R^(A) represents 2-cholor-4-fluoro.3. The compound of claim 1 wherein Ar¹ is 2-pyridyl.
 4. The compound ofclaim 1 wherein R^(B) represents 0 substituents.
 5. The compound ofclaim 1 wherein Y is O.
 6. The compound of claim 1 wherein R⁴ is methyl.7. The compound of claim 1 wherein Ak is methylene.
 8. The compound ofclaim 7 wherein X is C═O, —C(O)N(R^(N))—, or NR^(N).
 9. The compound ofclaim 8 wherein X is C═O.
 10. A compound of the formula

or a pharmaceutically acceptable salt thereof, wherein; Ar² is aryl orheteroaryl; R¹ is hydrogen or a pro-drug forming group; R⁴ is alkyl,heteroalkyl, alkenyl, or alkynyl, each of which is optionallysubstituted; Y is O, or HN; R⁶ is in each instance independentlyselected from the group consisting of hydrogen and Ak-Z¹, where Ak isalkylene, and Z¹ is hydrogen or NR²R³; where R² and R³ are independentlyin each instance selected from the group consisting of hydrogen, andalkyl, cycloalkyl, heteroalkyl and heterocycloalkyl, each of which isoptionally substituted, or R² and R³ are taken together with theattached nitrogen to form

wherein X is CHN₃, C═O, —C(O)N(R^(Na))—, C═NR⁵, or NR^(Na); where R⁵ ishydroxy or a derivative thereof or amino or a derivative thereof; andR^(Na) is selected from the group consisting of hydrogen, and alkyl,alkenyl, alkynyl, heteroalkyl, arylalkyl, heteroarylalkyl, alkyl-C(O),heteroalkyl-C(O), alkoxyl-C(O), alkynyl-C(O), alkylacylamino-C(O), andheteroalkylacylamino-C(O), each of which is optionally substituted; Ak¹is (CH₂)n, where n is 1 to 4; R^(A) represents from 0 to 3 substituentsindependently selected in each instance from the group consisting ofhalo, and alkyl, heteroalkyl, aryl, heteroaryl, amino and derivativesthereof, and hydroxyl and derivatives thereof, each of which isoptionally substituted; and R^(B) represents from 0 to 3 substituentsindependently selected in each instance from the group consisting ofhalo, and alkyl, heteroalkyl, aryl, heteroaryl, amino and derivativesthereof, and hydroxyl and derivatives thereof, each of which isoptionally substituted.
 11. The compound of claim 10 wherein R⁶ ismethyl.
 12. The compound of claim 10 wherein R⁶ is

where X is CHN₃, C=0, —C(O)N(R^(Na))—, C═NR⁵, or NR^(Na); where R⁵ ishydroxy or a derivative thereof or amino or a derivative thereof, andR^(Na) is hydrogen or alkyl, alkenyl, alkynyl, heteroalkyl, arylalkyl,heteroarylalkyl, alkyl-C(O), heteroalkyl-C(O), alkoxyl-C(O),alkynyl-C(O), alkylacylamino-C(O), or heteroalkylacylamino-C(O), each ofwhich is optionally substituted.
 13. The compound of claim 12 wherein Xis C═O, —C(O)N(R^(Na))—, or NR^(Na), where R^(Na) is hydrogen or alkyl,alkenyl, alkynyl, heteroalkyl, arylalkyl, heteroarylalkyl, alkyl-C(O),heteroallcyl-C(O), alkylacylamino-C(O), and heteroalkylacylamino-C(O),each of which is optionally substituted.
 14. The compound of claim 13wherein X is C═O.
 15. A pharmaceutical composition comprising atherapeutically effective amount of one or more compounds of claim 1 fortreating hepatitis B.
 16. (canceled)
 17. A method for treating a patientin need of relief from infection by hepatitis B virus, the methodcomprising the step of administering to the patient a therapeuticallyeffective amount of one or more compounds of claim 1, wherein the methodfor treating ameliorates at least one symptom of infection of hepatitisB virus in the patient or inhibits chronic infection by hepatitis Bvirus in the patient.
 18. (canceled)
 19. The method of claim 17 whereinthe infection is a chronic infection or an acute infection. 20.(canceled)
 21. The method of claim 17 wherein the compound activatesassembly of a virus core, disrupting the normal timing of virusproduction in an infected cell, and/or stabilizes existing capsids in aninfected cell, inhibiting dissociation of the virus core and release ofa viral genome in the cell's nucleus.
 22. (canceled)
 23. The method ofclaim 17 wherein the compound affects the viral lifecycle by inducingassembly of the viral core lowering the concentration of unassembledhepatitis B virus capsin protein and inhibiting a non-structuralactivity of the capsid protein.
 24. The method of claim 17 wherein thecompound acts on the viral lifecycle by binding to free capsid proteindimer inhibiting a capsid protein non-structural activity.